Publications
By Year
Now showing items 1201-1220 of 5325 records
SARS-CoV-2 Africa dashboard for real-time COVID-19 information.
Joicymara S Xavier; Monika Moir; Houriiyah Tegally; Nikita Sitharam; Wasim Abdool Karim; James E San; Joana Linhares; Eduan Wilkinson; David B Ascher; Cheryl Baxter; Douglas E V Pires; Tulio de Oliveira
NATURE MICROBIOLOGY - 01 Jan 2023
The SARS-CoV-2 Africa dashboard is an interactive tool that enables visualization of SARS-CoV-2 genomic information in African countries. The customizable app allows users to visualize the number of sequences deposited in each country, and the variants circulating over time. Our dashboard enables near real-time exploration of public data that can inform policymakers, healthcare professionals an...
Reduced cardiovascular reserve capacity in long-term allogeneic stem cell transplant survivors.
Hayley T Dillon; Stephen Foulkes; Yuki A Horne-Okano; David Kliman; David W Dunstan; Robin M Daly; Steve F Fraser; Sharon Avery; Bronwyn A Kingwell; Andre La Gerche; Erin J Howden
SCIENTIFIC REPORTS - 06 Feb 2023
Premature cardiovascular mortality is increased in long-term allogeneic stem cell transplant (allo-SCT) survivors, but little information exists regarding subclinical cardiovascular dysfunction in this population. We compared peak oxygen uptake ([Formula: see text]O), a prognostic cardiovascular marker, and its determinants between long-term allo-SCT survivors and non-cancer controls. Fourteen ...
Bidirectional associations of accelerometer-assessed physical activity and sedentary time with physical function among older English adults: the EPIC-Norfolk cohort study.
Dharani Yerrakalva; Samantha Hajna; Katrien Wijndaele; Paddy C Dempsey; Kate Westgate; Nick Wareham; Simon J Griffin; Soren Brage
EUROPEAN JOURNAL OF AGEING - 01 Dec 2022
To develop healthy ageing interventions, longitudinal associations between objectively assessed physical behaviours and physical function need to be better understood. We assessed associations between accelerometer-assessed total physical activity (PA), moderate-to-vigorous physical activity (MVPA), light physical activity (LPA), sedentary time and prolonged sedentary bout time, and clinically ...
The impact of coffee subtypes on incident cardiovascular disease, arrhythmias, and mortality: long-term outcomes from the UK Biobank.
David Chieng; Rodrigo Canovas; Louise Segan; Hariharan Sugumar; Aleksandr Voskoboinik; Sandeep Prabhu; Liang-Han Ling; Geoffrey Lee; Joseph B Morton; David M Kaye; Jonathan M Kalman; Peter M Kistler
EUROPEAN JOURNAL OF PREVENTIVE CARDIOLOGY - 07 Dec 2022
Epidemiological studies report the beneficial effects of habitual coffee consumption on incident arrhythmia, cardiovascular disease (CVD), and mortality. However, the impact of different coffee preparations on cardiovascular outcomes and survival is largely unknown. The aim of this study was to evaluate associations between coffee subtypes on incident outcomes, utilizing the UK Biobank.Coffee s...
Association of biomarkers and risk scores with subclinical left ventricular dysfunction in patients with type 2 diabetes mellitus.
Amera Halabi; Elizabeth Potter; Hilda Yang; Leah Wright; Julian W Sacre; Jonathan E Shaw; Thomas H Marwick
CARDIOVASCULAR DIABETOLOGY - 09 Dec 2022
Subclinical LV dysfunction (LVD) identifies heart failure (HF) risk in type 2 diabetes mellitus (T2DM). We sought the extent to which clinical scores (ARIC-HF, WATCH-DM), natriuretic peptides (NTpBNP) and troponin (hs-TnT) were associated with subclinical LV dysfunction (LVD). These associations could inform the ability of these tests to identify which patients should undergo echocardiography.P...
A bias of Asparagine to Lysine mutations in SARS-CoV-2 outside the receptor binding domain affects protein flexibility.
Jennifer C Boer; Qisheng Pan; Jessica K Holien; Thanh-Binh Nguyen; David B Ascher; Magdalena Plebanski
FRONTIERS IN IMMUNOLOGY - 01 Jan 2022
COVID-19 pandemic has been threatening public health and economic development worldwide for over two years. Compared with the original SARS-CoV-2 strain reported in 2019, the Omicron variant (B.1.1.529.1) is more transmissible. This variant has 34 mutations in its Spike protein, 15 of which are present in the Receptor Binding Domain (RBD), facilitating viral internalization via binding to the a...
Rapid cardiovascular aging following allogeneic hematopoietic cell transplantation for hematological malignancy.
Hayley T Dillon; Stephen Foulkes; Yuki A Horne-Okano; David Kliman; David W Dunstan; Robin M Daly; Steve F Fraser; Sharon Avery; Bronwyn A Kingwell; Andre La Gerche; Erin J Howden
FRONTIERS IN CARDIOVASCULAR MEDICINE - 01 Jan 2022
Allogeneic hematopoietic cell transplantation (allo-HCT) offers a potential cure for high-risk hematological malignancy; however, long-term survivors experience increased cardiovascular morbidity and mortality. It is unclear how allo-HCT impacts cardiovascular function in the short-term. Thus, this 3-month prospective study sought to evaluate the short-term cardiovascular impact of allo-HCT in ...
Stepping towards More Intuitive Physical Activity Metrics with Wrist-Worn Accelerometry: Validity of an Open-Source Step-Count Algorithm.
Benjamin D Maylor; Charlotte L Edwardson; Paddy C Dempsey; Matthew R Patterson; Tatiana Plekhanova; Tom Yates; Alex V Rowlands
SENSORS (BASEL, SWITZERLAND) - 18 Dec 2022
Stepping-based targets such as the number of steps per day provide an intuitive and commonly used method of prescribing and self-monitoring physical activity goals. Physical activity surveillance is increasingly being obtained from wrist-worn accelerometers. However, the ability to derive stepping-based metrics from this wear location still lacks validation and open-source methods. This study a...
People with type 2 diabetes' experiences of emotional support in Australian general practice: a qualitative study.
Rita McMorrow; Barbara Hunter; Nana Folmann Hempler; Kaleswari Somasundaram; Jon Emery; Jo-Anne Manski-Nankervis
BJGP OPEN - 01 Dec 2022
Diabetes distress, experienced by up to 40% of people with type 2 diabetes (T2D), is the negative emotional response to the burden of living with and managing diabetes. It is associated with suboptimal glycaemia and diabetes self-management. Research indicates that people with diabetes do not recall being asked about emotional distress by healthcare professionals.To explore the experiences, nee...
Genetically personalised organ-specific metabolic models in health and disease.
Carles Foguet; Yu Xu; Scott C Ritchie; Samuel A Lambert; Elodie Persyn; Artika P Nath; Emma E Davenport; David J Roberts; Dirk S Paul; Emanuele Di Angelantonio; John Danesh; Adam S Butterworth; Christopher Yau; Michael Inouye
NATURE COMMUNICATIONS - 29 Nov 2022
Understanding how genetic variants influence disease risk and complex traits (variant-to-function) is one of the major challenges in human genetics. Here we present a model-driven framework to leverage human genome-scale metabolic networks to define how genetic variants affect biochemical reaction fluxes across major human tissues, including skeletal muscle, adipose, liver, brain and heart. As ...
Prescribed opioid use is associated with adverse cardiovascular outcomes in community-dwelling older persons.
Stephanie M Liew; Enayet K Chowdhury; Michael E Ernst; Julia Gilmartin-Thomas; Christopher M Reid; Andrew Tonkin; Johannes Neumann; John J McNeil; David M Kaye
ESC HEART FAILURE - 01 Dec 2022
Prescribed opioids are commonly used in the older community-dwelling population for the treatment of chronic pain. Although the harmful effects of opioid abuse and overdose are well understood, little is known about the long-term cardiovascular (CV) effects of prescribed opioids. The aim of this study was to investigate the CV effects associated with prescribed opioid use.A post hoc analysis of...
Of Mice and Man: The Unwinding of CLEC-2 as an Antithrombotic Target?
James D McFadyen; Pierre H Mangin; Karlheinz Peter
THROMBOSIS AND HAEMOSTASIS - 01 Dec 2022
Brain and cardiovascular-related changes are associated with aging, hypertension, and atrial fibrillation.
Donggyu Rim; Luke A Henderson; Vaughan G Macefield
CLINICAL AUTONOMIC RESEARCH : OFFICIAL JOURNAL OF THE CLINICAL AUTONOMIC RESEARCH SOCIETY - 01 Dec 2022
The neural pathways in which the brain regulates the cardiovascular system is via sympathetic and parasympathetic control of the heart and sympathetic control of the systemic vasculature. Various cortical and sub-cortical sites are involved, but how these critical brain regions for cardiovascular control are altered in healthy aging and other risk conditions that may contribute to cardiovascula...
: A Web Server for Predicting Cardiotoxicity of Small Molecules.cardioToxCSM
Saba Iftkhar; Alex G C de Sá; João P L Velloso; Raghad Aljarf; Douglas E V Pires; David B Ascher
JOURNAL OF CHEMICAL INFORMATION AND MODELING - 24 Oct 2022
The design of novel, safe, and effective drugs to treat human diseases is a challenging venture, with toxicity being one of the main sources of attrition at later stages of development. Failure due to toxicity incurs a significant increase in costs and time to market, with multiple drugs being withdrawn from the market due to their adverse effects. Cardiotoxicity, for instance, was responsible ...
Spatiotemporal Investigation of Antibiotic Resistance in the Urban Water Cycle Influenced by Environmental and Anthropogenic Activity.
Keira Tucker; Leonardos Mageiros; Alno Carstens; Ludwig Bröcker; Edward Archer; Katrin Smith; Evangelos Mourkas; Ben Pascoe; Daan Nel; Guillaume Meric; Samuel K Sheppard; Barbara Kasprzyk-Hordern; Marelize Botes; Edward J Feil; Gideon Wolfaardt
MICROBIOLOGY SPECTRUM - 26 Oct 2022
With increasing emergence of antimicrobial resistant bacteria (ARB) and the risk this poses to public health, there are growing concerns regarding water pollution contributing to the spread of antimicrobial resistance (AMR) through inadequate amenities and the rapid rate of urbanization. In this study, the impact of different anthropogenic factors on the prevalence of AMR in the urban water cyc...
APOE ε2 resilience for Alzheimer's disease is mediated by plasma lipid species: Analysis of three independent cohort studies.
Tingting Wang; Kevin Huynh; Corey Giles; Natalie A Mellett; Thy Duong; Anh Nguyen; Wei Ling Florence Lim; Alex At Smith; Gavriel Olshansky; Gemma Cadby; Joseph Hung; Jennie Hui; John Beilby; Gerald F Watts; Pratishtha Chatterjee; Ian Martins; Simon M Laws; Ashley I Bush; Christopher C Rowe; Victor L Villemagne; David Ames; Colin L Masters; Kevin Taddei; Vincent Doré; Jürgen Fripp; Matthias Arnold; Gabi Kastenmüller; Kwangsik Nho; Andrew J Saykin; Rebecca Baillie; Xianlin Han; Ralph N Martins; Eric K Moses; Rima Kaddurah-Daouk; Peter J Meikle
ALZHEIMER'S & DEMENTIA : THE JOURNAL OF THE ALZHEIMER'S ASSOCIATION - 01 Nov 2022
The apolipoprotein E (APOE) genotype is the strongest genetic risk factor for late-onset Alzheimer's disease. However, its effect on lipid metabolic pathways, and their mediating effect on disease risk, is poorly understood.We performed lipidomic analysis on three independent cohorts (the Australian Imaging, Biomarkers and Lifestyle [AIBL] flagship study, n = 1087; the Alzheimer's Disease Neuro...
How Dietary Fibre, Acting via the Gut Microbiome, Lowers Blood Pressure.
Chudan Xu; Francine Z Marques
CURRENT HYPERTENSION REPORTS - 01 Nov 2022
To discuss the interplay behind how a high-fibre diet leads to lower blood pressure (BP) via the gut microbiome.Compelling evidence from meta-analyses support dietary fibre prevents the development of cardiovascular disease and reduces BP. This relation is due to gut microbial metabolites, called short-chain fatty acids (SCFAs), derived from fibre fermentation. The SCFAs acetate, propionate and...
Stroke genetics informs drug discovery and risk prediction across ancestries.
Aniket Mishra; Rainer Malik; Tsuyoshi Hachiya; Tuuli Jürgenson; Shinichi Namba; Daniel C Posner; Frederick K Kamanu; Masaru Koido; Quentin Le Grand; Mingyang Shi; Yunye He; Marios K Georgakis; Ilana Caro; Kristi Krebs; Yi-Ching Liaw; Felix C Vaura; Kuang Lin; Bendik Slagsvold Winsvold; Vinodh Srinivasasainagendra; Livia Parodi; Hee-Joon Bae; Ganesh Chauhan; Michael R Chong; Liisa Tomppo; Rufus Akinyemi; Gennady V Roshchupkin; Naomi Habib; Yon Ho Jee; Jesper Qvist Thomassen; Vida Abedi; Jara Cárcel-Márquez; Marianne Nygaard; Hampton L Leonard; Chaojie Yang; Ekaterina Yonova-Doing; Maria J Knol; Adam J Lewis; Renae L Judy; Tetsuro Ago; Philippe Amouyel; Nicole D Armstrong; Mark K Bakker; Traci M Bartz; David A Bennett; Joshua C Bis; Constance Bordes; Sigrid Børte; Anael Cain; Paul M Ridker; Kelly Cho; Zhengming Chen; Carlos Cruchaga; John W Cole; Phil L de Jager; Rafael de Cid; Matthias Endres; Leslie E Ferreira; Mirjam I Geerlings; Natalie C Gasca; Vilmundur Gudnason; Jun Hata; Jing He; Alicia K Heath; Yuk-Lam Ho; Aki S Havulinna; Jemma C Hopewell; Hyacinth I Hyacinth; Michael Inouye; Mina A Jacob; Christina E Jeon; Christina Jern; Masahiro Kamouchi; Keith L Keene; Takanari Kitazono; Steven J Kittner; Takahiro Konuma; Amit Kumar; Paul Lacaze; Lenore J Launer; Keon-Joo Lee; Kaido Lepik; Jiang Li; Liming Li; Ani Manichaikul; Hugh S Markus; Nicholas A Marston; Thomas Meitinger; Braxton D Mitchell; Felipe A Montellano; Takayuki Morisaki; Thomas H Mosley; Mike A Nalls; Børge G Nordestgaard; Martin J O'Donnell; Yukinori Okada; N Charlotte Onland-Moret; Bruce Ovbiagele; Annette Peters; Bruce M Psaty; Stephen S Rich; Jonathan Rosand; Marc S Sabatine; Ralph L Sacco; Danish Saleheen; Else Charlotte Sandset; Veikko Salomaa; Muralidharan Sargurupremraj; Makoto Sasaki; Claudia L Satizabal; Carsten O Schmidt; Atsushi Shimizu; Nicholas L Smith; Kelly L Sloane; Yoichi Sutoh; Yan V Sun; Kozo Tanno; Steffen Tiedt; Turgut Tatlisumak; Nuria P Torres-Aguila; Hemant K Tiwari; David-Alexandre Trégouët; Stella Trompet; Anil Man Tuladhar; Anne Tybjærg-Hansen; Marion van Vugt; Riina Vibo; Shefali S Verma; Kerri L Wiggins; Patrik Wennberg; Daniel Woo; Peter W F Wilson; Huichun Xu; Qiong Yang; Kyungheon Yoon; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; Iona Y Millwood; Christian Gieger; Toshiharu Ninomiya; Hans J Grabe; J Wouter Jukema; Ina L Rissanen; Daniel Strbian; Young Jin Kim; Pei-Hsin Chen; Ernst Mayerhofer; Joanna M M Howson; Marguerite R Irvin; Hieab Adams; Sylvia Wassertheil-Smoller; Kaare Christensen; Mohammad A Ikram; Tatjana Rundek; Bradford B Worrall; G Mark Lathrop; Moeen Riaz; Eleanor M Simonsick; Janika Kõrv; Paulo H C França; Ramin Zand; Kameshwar Prasad; Ruth Frikke-Schmidt; Frank-Erik de Leeuw; Thomas Liman; Karl Georg Haeusler; Ynte M Ruigrok; Peter Ulrich Heuschmann; W T Longstreth; Keum Ji Jung; Lisa Bastarache; Guillaume Paré; Scott M Damrauer; Daniel I Chasman; Jerome I Rotter; Christopher D Anderson; John-Anker Zwart; Teemu J Niiranen; Myriam Fornage; Yung-Po Liaw; Sudha Seshadri; Israel Fernández-Cadenas; Robin G Walters; Christian T Ruff; Mayowa O Owolabi; Jennifer E Huffman; Lili Milani; Yoichiro Kamatani; Martin Dichgans; Stephanie Debette
NATURE - 01 Nov 2022
Previous genome-wide association studies (GWASs) of stroke - the second leading cause of death worldwide - were conducted predominantly in populations of European ancestry. Here, in cross-ancestry GWAS meta-analyses of 110,182 patients who have had a stroke (five ancestries, 33% non-European) and 1,503,898 control individuals, we identify association signals for stroke and its subtypes at 89 (6...
kinCSM: Using graph-based signatures to predict small molecule CDK2 inhibitors.
Yunzhuo Zhou; Raghad Al-Jarf; Azadeh Alavi; Thanh Binh Nguyen; Carlos H M Rodrigues; Douglas E V Pires; David B Ascher
PROTEIN SCIENCE : A PUBLICATION OF THE PROTEIN SOCIETY - 01 Nov 2022
Protein phosphorylation acts as an essential on/off switch in many cellular signaling pathways. This has led to ongoing interest in targeting kinases for therapeutic intervention. Computer-aided drug discovery has been proven a useful and cost-effective approach for facilitating prioritization and enrichment of screening libraries, but limited effort has been devoted providing insights on what ...
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